Production of Disulfide-Rich Cow Knob Domain Antibodies: Picobodies™

Aug 24, 2026 | Case Studies

BACKGROUND

  • About 10% of cow antibodies have exceptionally long heavy chain CDR3 regions, including a stalk and knob region.
  • The knob region of CDR H3 is about 4-6 kDa in size with a highly diverse sequence content and multiple disulfide bonding patterns: these are known as Picobodies™.
  • Picobodies can be used for inhaled therapy because of their small size and stability.

Challenge

Because of their small size Picobodies can be independently genetically engineered and developed to therapeutically target crevices, pores, or other protein epitopes that larger antibodies cannot. However, Picobodies with complex disulfide bonding patterns can be difficult to produce.

Solution

The Pfenex Expression Technology® platform, with its extensive toolbox of genetic elements, fusion partners and modified host strains, was utilized to quickly identify expression strains producing high titer and high quality Picobodies for further preclinical development.

Protein structure illustration of a cow antibody showing the CDR H3 knob and stalk
SDS-CGE of soluble lysate fractions, non-reduced, across secretion leaders 1 to 10

Key Results

SDS-CGE Analysis of Soluble Picobodies (90 min/plate)

SDS-capillary gel electrophoresis (SDS-CGE) used to assess expression and solubility.

SDS-CGE detected induced bands of soluble Picobody fusion proteins (green) up to ~2 g/L at 96-well expression scale.

BLI Activity Analysis (30-60 min per plate)

Product quantity and quality assessed via biolayer interferometry (BLI). Strains producing highly active soluble Picobody fusion proteins (green) identified by binding to SARS-CoV-2 spike protein compared to wild-type strain (red to dashed line).

Host strain screening: BLI binding rate by plasmid
RP-UPLC chromatograph of fusion-Picobody and cleaved Picobody

Cleaved Picobody Maintains Binding to SARS-CoV-2 Spike Protein

RP-UPLC and LC-MS confirm expected cleavage of Picobody from fusion protein. ELISA analysis confirmed binding to SARS-CoV-2 spike protein (IC50 = 19 nM).

Theoretical and observed masses for fusion-Picobody and cleaved Picobody, and percent activity versus Picobody concentration
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